Published Gene Expression Datasets
This page lists gene expression studies published by our group, together with the public accession numbers and key dataset metadata.
Studies
| Publication | Accession number | Organism / tissue | Year | Journal |
|---|---|---|---|---|
| Inflammation induced by influenza virus impairs human innate immune control of pneumococcus (Link to paper) | [Bulk RNA-seq] GEO: GSE117580 | Human nasal cell | 2018 | Nature Immunology |
| Pneumococcal colonization impairs mucosal immune responses to live attenuated influenza vaccine (Link to paper) | [Bulk RNA-seq] GEO: GSE164649 | Human nasal cell | 2021 | JCI insight |
| Inflammation of the nasal mucosa is associated with susceptibility to experimental pneumococcal challenge in older adults (Link to paper) | [Bulk RNA-seq] GEO: GSE261277 | Human nasal cell | 2024 | Mucosal Immunology |
| RSV and rhinovirus increase pneumococcal carriage acquisition and density, whereas nasal inflammation is associated with bacterial shedding (Link to paper) | [Bulk RNA-seq] BioProject: PRJNA1109576 | Human nasal cell | 2024 | Cell Host & Microbe |